Using --no_norm with CLI slows down 3D segmentation[BUG]

MouseLand / cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

https://www.cellpose.org/

BSD 3-Clause "New" or "Revised" License

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Using --no_norm with CLI slows down 3D segmentation[BUG] #898

Open derekthirstrup opened 6 months ago

derekthirstrup commented 6 months ago

The segmentation of 3d tif stacks is taking 5-6 minutes to process 1 image when --no_norm is used. When the same stacks are processed without --no_norm argument then it takes roughly 20 seconds. I previously denoised and rescaled the images so they do not need to be rescaled again during segmentation. Any ideas why it takes significantly more time with --no_norm option? Seems like it should be faster.

carsen-stringer commented 2 weeks ago

hmm this is strange, is the output exactly the same with and without --no_norm?