MouseLand / cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
https://www.cellpose.org/
BSD 3-Clause "New" or "Revised" License
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Backwards compatibility of Cellpose 3 with models trained in Cellpose 2? #959

Open StevenBackues opened 2 weeks ago

StevenBackues commented 2 weeks ago

We recently trained and validated (and published!) a custom model for segmenting autophagic bodies in yeast TEM images using Cellpose 2 (specifically, 2.1.1_cv2 in biocontainers). Is it possible to use this model with Cellpose 3? It doesn't seem to be - our script breaks, and when I try loading the model in the GUI the "run" button remains grayed out. But it would be a bit disappointing if not - am I missing something?