search

MouseLand / suite2p

cell detection in calcium imaging recordings
http://www.suite2p.org
GNU General Public License v3.0
344 stars 240 forks source link

Extract total number of calcium spikes from entire 2D+T datasets #1013

Open Eddymorphling opened 1 year ago

Eddymorphling commented 1 year ago

Hi all, I am a relatively new user to suite2p. I have it up and running and I use the Cellpose cyto2 model to segment/extract gCaMP signals expressed in a Hela cells.

Is it possible to extract the total number of Calcium oscillation from a single 2D + T dataset post analysis? I was not sure how to get to this metric, Any advise would be appreciated!

Thanks.