MouseLand / suite2p

cell detection in calcium imaging recordings
http://www.suite2p.org
GNU General Public License v3.0
334 stars 239 forks source link

BUG: why no ROIs are labeled after data processing #1054

Closed yduxx closed 8 months ago

yduxx commented 8 months ago

Describe the issue:

I just installed the suite2p. the installment seems going well.

after I finish the image registration, Ca extraction and all the data processing procedures, no ROIs are labeled. but there are identified cells and non-cells indicated above the image zone. all seem going well except for the labeled ROI.

when I click on the ROIs on[space bar], nothing happened in the image zone.

Reproduce the code example:

in the anaconda prompt, it reported
 "QGraphicsScene::removeItem: item 0x21a4c41a370's scene (0x0) is different from this scene (0x21a4ab4f4e0)
QGraphicsScene::removeItem: item 0x21a4c6dbba0's scene (0x0) is different from this scene (0x21a4ab4f4e0)
", every time when I click on the "ROIs on[space bar]".

Error message:

No response

Version information:

suite2p v0.14.2

Context for the issue:

No response

Andrianarivelo commented 8 months ago

I have the same issue on windows 10 even after following this :

conda create --name suite2p python=3.9
conda activate suite2p
pip install PyQt-builder
python -m pip install suite2p[gui]
python -m pip install suite2p[io]
python -m suite2p
landoskape commented 8 months ago

There is a solution to this issue in PR #1029.

Andrianarivelo commented 8 months ago

Hi thanks for the response, I don't get the fix...

landoskape commented 8 months ago

@yduxx see the discussion in #1028 for a solution

chriski777 commented 8 months ago

Hi @Andrianarivelo, as mentioned by @landoskape, the fix in #1029 has been merged to the main branch. Please pull the latest changes from the main branch and try after rebuilding suite2p.