chriski777
commented
6 months ago Hi @Kojot1444, for the manual labeling issue, is this a 1P recording? If so, you can try playing with the spatial_taper parameter as it determines the number of pixels that are ignored for analysis on the edges. You can try lowering it a bit to see if you can get the pixels involved in the cells you want to manually add. There is a tradeoff though between including more pixels in the edges and the quality of the registration so keep that in mind!
As for your second point on being able to have labels across multiple days, we don't explicitly yet have features to accommodate that. One thing you can do is just run the datasets for multiple days together through suite2p. Then, your labels will be consistent across days. This assumes though that the FOV is roughly similar across days.
Kojot1444
Describe the issue:
Hi, I am using the latest version of suite2P and getting some issues with the manual labeling option. In the manual labeling interface the image appears in a smaller size so that the cells on the edges are not visible and can not be labeled. I am attaching the screenshots below. An other question, I would like to use manual labeling option to track the same cells collected at different days. Is there a way to save the Ids of the marked cells? So that the cell that I mark first would have Id1 and so on?
Thanks a lot!
Reproduce the code example:
Error message:
No response
Version information:
v0.14.0
Context for the issue:
No response