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MouseLand / suite2p

cell detection in calcium imaging recordings
http://www.suite2p.org
GNU General Public License v3.0
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BUG: Changing functional detect settings produces an error #1077

Closed kyesther00 closed 5 months ago

kyesther00 commented 5 months ago

Describe the issue:

I've been changing the parameters on Suite2p to see what works best with my current images, but recently, when I change spare_mode to 0, it gives me an error, but when I leave it as it is (which is = 1 at the moment), it processes my images without any errors.

Reproduce the code example:

>>>ERROR<<<
Traceback (most recent call last):
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\runpy.py", line 197, in _run_module_as_main
>>>ERROR<<<
    return _run_code(code, main_globals, None,
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\runpy.py", line 87, in _run_code
>>>ERROR<<<
    exec(code, run_globals)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\__main__.py", line 84, in <module>
>>>ERROR<<<
    main()
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\__main__.py", line 77, in main
>>>ERROR<<<
    run_s2p(ops, db)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\run_s2p.py", line 521, in run_s2p
>>>ERROR<<<
    op = run_plane(op, ops_path=ops_path)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\run_s2p.py", line 336, in run_plane
>>>ERROR<<<
    ops = pipeline(f_reg, f_raw, f_reg_chan2, f_raw_chan2, run_registration, ops,
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\run_s2p.py", line 165, in pipeline
    ops, stat = detection.detection_wrapper(f_reg, ops=ops, classfile=classfile)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\detection\detect.py", line 172, in detection_wrapper
>>>ERROR<<<
    stat = select_rois(
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\detection\detect.py", line 240, in select_rois
    ops, stat = sourcery.sourcery(mov=mov, ops=ops)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\detection\sourcery.py", line 405, in sourcery
    S, StU, StS = getStU(ops, U)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\detection\sourcery.py", line 67, in getStU
    S = create_neuropil_basis(ops, Lyc, Lxc)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\detection\sourcery.py", line 128, in create_neuropil_basis
    ntilesY = 1 + 2 * int(
OverflowError: cannot convert float infinity to integer
Interrupted by error (not finished)

Error message:

>>>ERROR<<<
Traceback (most recent call last):
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\runpy.py", line 197, in _run_module_as_main
>>>ERROR<<<
    return _run_code(code, main_globals, None,
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\runpy.py", line 87, in _run_code
>>>ERROR<<<
    exec(code, run_globals)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\__main__.py", line 84, in <module>
>>>ERROR<<<
    main()
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\__main__.py", line 77, in main
>>>ERROR<<<
    run_s2p(ops, db)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\run_s2p.py", line 521, in run_s2p
>>>ERROR<<<
    op = run_plane(op, ops_path=ops_path)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\run_s2p.py", line 336, in run_plane
>>>ERROR<<<
    ops = pipeline(f_reg, f_raw, f_reg_chan2, f_raw_chan2, run_registration, ops,
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\run_s2p.py", line 165, in pipeline
    ops, stat = detection.detection_wrapper(f_reg, ops=ops, classfile=classfile)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\detection\detect.py", line 172, in detection_wrapper
>>>ERROR<<<
    stat = select_rois(
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\detection\detect.py", line 240, in select_rois
    ops, stat = sourcery.sourcery(mov=mov, ops=ops)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\detection\sourcery.py", line 405, in sourcery
    S, StU, StS = getStU(ops, U)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\detection\sourcery.py", line 67, in getStU
    S = create_neuropil_basis(ops, Lyc, Lxc)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\detection\sourcery.py", line 128, in create_neuropil_basis
    ntilesY = 1 + 2 * int(
OverflowError: cannot convert float infinity to integer
Interrupted by error (not finished)

Version information:

suite2p v0.14.2

Context for the issue:

No response