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MouseLand / suite2p

cell detection in calcium imaging recordings
http://www.suite2p.org
GNU General Public License v3.0
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BUG: Error with registration/ROI extraction #1087

Open kyesther00 opened 5 months ago

kyesther00 commented 5 months ago

Describe the issue:

I've been using Suite2p fine for the past few weeks but today it gave me this error during registration for a recording I've previously processed without any issues and I'm not sure what the problem is.

Reproduce the code example:

n/a

Error message:

>>>ERROR<<<
Traceback (most recent call last):
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\runpy.py", line 197, in _run_module_as_main
>>>ERROR<<<
    return _run_code(code, main_globals, None,
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\runpy.py", line 87, in _run_code
    exec(code, run_globals)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\__main__.py", line 84, in <module>
    main()
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\__main__.py", line 77, in main
    run_s2p(ops, db)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\run_s2p.py", line 547, in run_s2p
    op = run_plane(op, ops_path=ops_path)
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\run_s2p.py", line 342, in run_plane
    ops = pipeline(f_reg, f_raw, f_reg_chan2, f_raw_chan2, run_registration, ops,
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\run_s2p.py", line 114, in pipeline
    registration_outputs = registration.registration_wrapper(
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\registration\register.py", line 641, in registration_wrapper
    outputs = compute_reference_and_register_frames(f_align_in, f_align_out=f_align_out,
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\registration\register.py", line 464, in compute_reference_and_register_frames
    f_align_out[k:min(k + batch_size, n_frames)] = frames
  File "C:\Users\yk623\AppData\Local\anaconda3\envs\suite2p\lib\site-packages\suite2p\io\binary.py", line 118, in __setitem__
    self.file[indices] = np.minimum(data, 2**15 - 2).astype("int16")
>>>ERROR<<<
ValueError: could not broadcast input array from shape (500,512,512) into shape (414,512,512)
Interrupted by error (not finished)

Version information:

suite2p v0.14.3

Context for the issue:

No response