search

MouseLand / suite2p

cell detection in calcium imaging recordings
http://www.suite2p.org
GNU General Public License v3.0
334 stars 239 forks source link

support for dcimg #1100

Closed nguyemi5 closed 4 months ago

nguyemi5 commented 4 months ago

This PR adds support for DCAM image format produced by Hamamatsu cameras using dcimg package from https://github.com/lens-biophotonics/dcimg.

codecov[bot] commented 4 months ago

Codecov Report

Attention: Patch coverage is 17.89474% with 78 lines in your changes are missing coverage. Please review.

Project coverage is 54.42%. Comparing base (d5384fa) to head (51c8830).

Files Patch % Lines
suite2p/io/dcam.py 15.62% 54 Missing :warning:
suite2p/io/utils.py 9.52% 19 Missing :warning:
suite2p/run_s2p.py 44.44% 5 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #1100 +/- ## ========================================== - Coverage 55.10% 54.42% -0.69% ========================================== Files 42 43 +1 Lines 4961 5055 +94 ========================================== + Hits 2734 2751 +17 - Misses 2227 2304 +77 ```

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.