MouseLand / suite2p

cell detection in calcium imaging recordings
http://www.suite2p.org
GNU General Public License v3.0
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FEATURE: ROI registration and interpretation of #1116

Open eunjoy21 opened 7 months ago

eunjoy21 commented 7 months ago

Feature you'd like to see:

My first question is: when the plot data is exported to csv file after choosing an activity mode, I found the last column containing negative values in all csv files. Could you explain what those negative values mean and how it was calculated?

Also, it looks like there is a kind of sequence, like 3, 2.5, 2, and so on. Could you explain why? I've attached an image showing what I found in a csv file.

My last question is, I would like to track the same cells over time. Is there any function that I can register or save the ROI from one image and use it to another image by uploading the previous ROI?

Suite2p_csv_screencapture

Attempted alternative approaches:

I already tried using the classifier function, but it didn't work.

Additional Context

No response

RichieHakim commented 1 month ago

For tracking ROIs over multiple sessions: https://github.com/RichieHakim/ROICaT