If "h5py" in ops is a list, then the function find_files_open_binaries turns it into a list of lists when doing:
fs = [fs]
This causes the following error:
Traceback (most recent call last):
Cell In[1], line 258
ops_out = suite2p.run_s2p(ops=ops_folder)
File ~\miniforge3\envs\suite2p\lib\site-packages\suite2p\run_s2p.py:501 in run_s2p
ops0 = convert_funs[ops["input_format"]](ops.copy())
File ~\miniforge3\envs\suite2p\lib\site-packages\suite2p\io\h5.py:54 in h5py_to_binary
with h5py.File(h5, "r") as f:
File ~\miniforge3\envs\suite2p\lib\site-packages\h5py\_hl\files.py:536 in __init__
name = filename_encode(name)
File ~\miniforge3\envs\suite2p\lib\site-packages\h5py\_hl\compat.py:19 in filename_encode
filename = fspath(filename)
TypeError: expected str, bytes or os.PathLike object, not list
The issue can be solved by replacing:
fs = [fs]
with:
if not isinstance(fs, list):
fs = [fs]
I had not experienced this issue in the previous suite2p version
Describe the issue:
If "h5py" in ops is a list, then the function find_files_open_binaries turns it into a list of lists when doing:
fs = [fs]This causes the following error:
The issue can be solved by replacing:
fs = [fs]with:
I had not experienced this issue in the previous suite2p version
Reproduce the code example:
Error message:
No response
Version information:
v0.14.4
Context for the issue:
No response