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MouseLand / suite2p

cell detection in calcium imaging recordings
http://www.suite2p.org
GNU General Public License v3.0
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Support Neurodata Without Borders? #316

Closed tbenst closed 3 years ago

tbenst commented 4 years ago

Thanks for this package! I've mostly been using CaImAn and wanted to give suite2p a try. It would be great if suite2p would support Neurodata Without Borders .nwb for reading & writing data, as that would make it much easier for researchers to try new/different pipelines. Thanks for your work, and consideration!

https://pynwb.readthedocs.io/en/stable/

carsen-stringer commented 4 years ago

Agree this is a good idea, I am attending the hackathon in a couple weeks and will add support then!

eann commented 4 years ago

Hi! I'm attending the hackathon too, and I was wondering if I could help with adding NWB support

carsen-stringer commented 4 years ago

that would be awesome yes! current plan is to support in order of priority

  1. exporting to NWB format
  2. loading NWB format into GUI
  3. (optional - not preferred/priority) loading NWB format for processing
carsen-stringer commented 4 years ago

1 + 2 are done!

is there an example of a file for 3? is that what you wanted @tbenst ?