Suite2P won't save in NWB format

[sdaste]

Hi Carsen, First thanks a lot for the amazing work you've done with Suite2P. I've updated the Suite2P version in order to save the output files in NWB format. I've set the save_NWB input to 1. It runs well and saves all the planes in npy but not in NWB. I get this message at the end: ----------- SPIKE DECONVOLUTION ----------- Total 0.18 sec. Plane 2 processed in 318.48 sec (can open in GUI). total = 993.70 sec. pip install pynwb OR don"t use mesoscope recording TOTAL RUNTIME 994.50 sec Interrupted by error (not finished)

Do you have any idea what the problem would be ? It seems like a trivial problem, sorry for that..

Thanks a lot! Simon

[carsen-stringer]

Yeah I should write a better error message, you need to 'pip install pynwb'

If you're using mesoscope recordings, it's currently not supported

On Tue, May 19, 2020, 1:43 PM sdaste notifications@github.com wrote:

Hi Carsen, First thanks a lot for the amazing work you've done with Suite2P. I've updated the Suite2P version in order to save the output files in NWB format. I've set the save_NWB input to 1. It runs well and saves all the planes in npy but not in NWB. I get this message at the end: ----------- SPIKE DECONVOLUTION ----------- Total 0.18 sec. Plane 2 processed in 318.48 sec (can open in GUI). total = 993.70 sec. pip install pynwb OR don"t use mesoscope recording TOTAL RUNTIME 994.50 sec Interrupted by error (not finished)

Do you have any idea what the problem would be ? It seems like a trivial problem, sorry for that..

Thanks a lot! Simon

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/MouseLand/suite2p/issues/330, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADS6TFOHFRCH2FX765CKL3LRSLAK5ANCNFSM4NFGXJUQ .

[sdaste]

Awesome, yes it worked! Many thanks!