I want to perform motion correction on a filtered stack and then apply the motion correction to the raw data.
Using suite2p 0.10.0, I was able to apply the shifts from the filtered stack to the raw data using registration.register.nonrigid.transform_data as shown below. For this, I re-used the ops from the filtered stack.
Using suite2p 0.13.0, I can no longer do this. An error is thrown because the ops nblocks, xblock, and yblock are no longer saved.
Reproduce the code example:
## just copying a few relevant code bits here...
# running the correction on filtered data:
ops = default_ops()
db = {
'look_one_level_down': False,
'data_path': [self.temp_path_2],
'tau': self.tau,
'fs': self.volrate,
'diameter': self.diameter,
'reg_tif': True,
'roidetect': False,
'do_registration': True,
'nonrigid': True,
'keep_movie_raw': True,
'do_regmetrics': True
}
run_s2p(ops=ops, db=db)
# then applying the shifts to the raw data:
registration.register.nonrigid.transform_data(
data,
nblocks=ops['nblocks'],
xblock=ops['xblock'],
yblock=ops['yblock'],
ymax1=ymax1,
xmax1=xmax1
)
Error message:
No response
Version information:
0.13.0
Context for the issue:
Current workaround is to downgrade suite2p to 0.10.0
Describe the issue:
I want to perform motion correction on a filtered stack and then apply the motion correction to the raw data. Using suite2p 0.10.0, I was able to apply the shifts from the filtered stack to the raw data using registration.register.nonrigid.transform_data as shown below. For this, I re-used the ops from the filtered stack.
Using suite2p 0.13.0, I can no longer do this. An error is thrown because the ops nblocks, xblock, and yblock are no longer saved.
Reproduce the code example:
Error message:
No response
Version information:
0.13.0
Context for the issue:
Current workaround is to downgrade suite2p to 0.10.0