MouseLand / suite2p

cell detection in calcium imaging recordings
http://www.suite2p.org
GNU General Public License v3.0
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FEATURE: Use processed suite2p output to run registration only #984

Open horsto opened 1 year ago

horsto commented 1 year ago

Feature you'd like to see:

I have previously run suite2p over data and curated the output / used the analysis results. Now I want to create videos from the motion corrected output. What is the easiest way to use the already processed output to (re-)construct motion corrected tifs?

Attempted alternative approaches:

I can load the .ops files and "skip" cell detection and deconvolution, but is there a way to use the motion correction info in the .ops output files to reconstruct the registered tifs (so I can show the corrected data that the output is based upon)?

Additional Context

No response

darikoneil commented 1 year ago

You can load the registered binary and save to tiff using tifffile, pillow, or skimage

horsto commented 1 year ago

I don't have the registered binary.