h5py and paramiko packages not installed with 'python -m pip install suite2p[gui]'

[Atika-Syeda]

Describe the issue:

Followed installation instructions for GUI version on a linux machine but the commands suite2p --version and python -m suite2p resulted in following errors: ModuleNotFoundError: No module named 'h5py' and ModuleNotFoundError: No module named 'paramiko' Errors were resolved after installing the packages in the conda env.

Provide environment info:

 active environment : suite2p
active env location : /home/stringlab/anaconda3/envs/suite2p
        shell level : 1
   user config file : /home/stringlab/.condarc

populated config files : /home/stringlab/.condarc conda version : 4.11.0 conda-build version : 3.21.5 python version : 3.9.7.final.0 virtual packages : cuda=11.6=0 linux=5.15.0=0 glibc=2.31=0 unix=0=0 __archspec=1=x86_64 base environment : /home/stringlab/anaconda3 (writable) conda av data dir : /home/stringlab/anaconda3/etc/conda conda av metadata url : None channel URLs : https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /home/stringlab/anaconda3/pkgs /home/stringlab/.conda/pkgs envs directories : /home/stringlab/anaconda3/envs /home/stringlab/.conda/envs platform : linux-64 user-agent : conda/4.11.0 requests/2.26.0 CPython/3.9.7 Linux/5.15.0-75-generic ubuntu/20.04.6 glibc/2.31 UID:GID : 1000:1000 netrc file : None offline mode : False

[carsen-stringer]

thanks this is now fixed + with more documentation