MrOlm / inStrain

Bioinformatics program inStrain
MIT License
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missing genomes in genome_info.tsv files. #130

Closed jehaab closed 1 year ago

jehaab commented 1 year ago

Hello, I used profile on metagenome assembled genomes I recovered from my samples. However some are missing from the genome_info.tsv files. I guess it's just that the MAGs were not detected in my samples, but just wanted to make sure it is normal.

Thank you in advance for your answer,

Jehane

MrOlm commented 1 year ago

Hello,

Yes, if you use database_mode only genomes with at least 1x coverage will be reported. If you don’t use the database_mode flag, all genomes with at least 1 mapped read will be reported

jehaab commented 1 year ago

Thank you for your answer, have a good day