MullinsLab / viroverse

a platform for the collection, storage, retrieval, and analysis of experimental data for laboratory workflows
MIT License
5 stars 1 forks source link

Fix execution of quality command-line tool #60

Closed silby closed 5 years ago

silby commented 5 years ago

After revamping the configuration file mechanism, the interpolation of this shell command became incorrect, and quality would not execute. Instead we can see this telltale error in the log:

sh: Viroverse::Config-: command not found

It works now. I spent zero time looking for other ways to improve this code just now; it should probably do things like checking the shell command for errors and handling them more sensibly. But a lot of this should be more sensible than it is.