ghost
commented
6 years ago - Name of tool:
- MGA
- Tool description:
- Multi-genome alignment contaminant screen for high-throughput sequence data
- Tool homepage:
- https://github.com/crukci-bioinformatics/MGA
- Complete log file output:
- When the tool runs successfully it creates a file of this kind (I changed the extension from .xml to .txt to be able to put the file here): results.txt
- Log filename pattern:
- results.xml
- Most interesting data for General Stats table:
- Not too sure... Maybe for each sample (every
block in the xml file) find the reference genome that got the highest AssignedCount value (not the AlignedCount) and display that genome name, or unaligned if the UnmappedCount is even higher?
- Not too sure... Maybe for each sample (every
- Data suitable for MultiQC plot(s):
- So far our idea is to have the AssignedCount values for each organism for each sample as a bargraph (one bar per sample with a different colour for each organism). But maybe there is a better way. At the moment using a custom_data section we get something like this:
- So far our idea is to have the AssignedCount values for each organism for each sample as a bargraph (one bar per sample with a different colour for each organism). But maybe there is a better way. At the moment using a custom_data section we get something like this:
ewels