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MultiQC / MultiQC_SAV

MultiQC plugin replicating the most used plots and tables from Illumina's SAV
MIT License
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Not picking up input files #5

Open Lumimar opened 3 weeks ago

Lumimar commented 3 weeks ago

Hi Matthias,

I seem to have successfully installed multiqc_sav, as the list of plugins after installation includes SAV, but when I run

multiqc -m SAV .

in folders containing

InterOp/
RunInfo.xml
RunParameters.xml

I get 

/// MultiQC 🔍 v1.25.1

       file_search | Search path: /xxx
       file_search | Only using modules: SAV
         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 12/12  
           multiqc | No analysis results found. Cleaning up…

Any suggestions? Many thanks!

Lumimar commented 3 weeks ago

Here is a detailed list of files in the folder, if it helps!

├── CompletedJobInfo.xml
├── GenerateFASTQRunStatistics.xml
├── InterOp
│   ├── ControlMetricsOut.bin
│   ├── CorrectedIntMetricsOut.bin
│   ├── ErrorMetricsOut.bin
│   ├── ExtractionMetricsOut.bin
│   ├── IndexMetricsOut.bin
│   ├── QMetricsOut.bin
│   └── TileMetricsOut.bin
├── RunInfo.xml
├── RunParameters.xml
└── SampleSheet.csv
Lumimar commented 3 weeks ago

Further check: the Illumina Sequencing Analysis Viewer recognises the files, so that rules out issues with the input files...