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Murali-group / Beeline

BEELINE: evaluation of algorithms for gene regulatory network inference
GNU General Public License v3.0
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BLPlot #64

Open michavol opened 2 years ago

michavol commented 2 years ago

Dear Murali Group,

I am currently writing my Bachelor Thesis on Gene Regulatory Network Inference methods. I was delighted to see your paper, tool, and thorough documentation for benchmarking different algorithms. Thank you for the great work!

I managed to set up everything and run the algorithms. However, I am a bit confused regarding the usage of the BLPlot modules. Precisely, how should one specify the levels parameter? Would it be possible for you to share the function calls you used to generate the figures in your paper?

Best regards, Mike

ktakers commented 2 years ago

Thank you for using Beeline in your work. Unfortunately the BLPlot code currently checked into github doesn't produce the plots in the paper. There are corresponding jupyter notebooks that have yet to be pushed, which I'll work on testing again before uploading.

michavol commented 2 years ago

I understand, thank you for the response!