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Murali-group / Beeline

BEELINE: evaluation of algorithms for gene regulatory network inference
GNU General Public License v3.0
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Update r-base version in Dockerfiles and init.py in BLRun & BLEval #86

Closed yiqisu closed 1 year ago

yiqisu commented 1 year ago

I have updated the r-base version from 3.5.3 to 4.2.2 and fixed gcc issue for SCODE by removing -8-base.

I also revised the init.py script in both BLRun and BLEval folders to run BEELINE on every sub-directory of dataset_dir when 'datasets' is absent or commented out.

tmmurali commented 1 year ago

@yiqisu please split this commit into two separate commits: one for updating r-base and gcc and the other for the init.py script. Please also close issue #85 when you create the second pull request.

I also noted that some code for implementing scSGL is part of this commit. Please remove these files.

yiqisu commented 1 year ago

I close this pull request and will create separate ones for different problems.