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Murali-group / Beeline

BEELINE: evaluation of algorithms for gene regulatory network inference
GNU General Public License v3.0
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where is the tfs+500 and tfs+1000 datasets? #98

Closed prsigma closed 5 months ago

prsigma commented 5 months ago

Hello, I am very grateful for your outstanding work, but I could not find the 'tfs+500' and 'tfs+1000' datasets from the paper on the provided data website. How can I access them?

yiqisu commented 5 months ago

Hi, thanks for your question. Please refer to generateExpInputs.py for an example of generating datasets with all TFs and 500 genes (TFs+500). You can generate TFs+1000 datasets by adjusting the '-n' or '--numGenes' parameter to 1000.

prsigma commented 5 months ago

Hi, thanks for your question. Please refer to generateExpInputs.py for an example of generating datasets with all TFs and 500 genes (TFs+500). You can generate TFs+1000 datasets by adjusting the '-n' or '--numGenes' parameter to 1000.

Thanks for your answer, I'll give it a try.