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Murali-group / SARS-CoV-2-network-analysis

Software framework for analysis of SARS-CoV-2 molecular networks
GNU General Public License v3.0
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Coordinate generation of negative examples and cross validation folds between network prop and PPI prediction #1

Open tmmurali opened 4 years ago

tmmurali commented 4 years ago

For network propagation, we plan to augment host interactors (of viral proteins) from the Krogan dataset with predicted host interactors. Since we will perform cross validation for both tasks, we have to coordinate generation of negative examples and cross validation folds between them so that no information "leaks" from one task to the other.

tmmurali commented 4 years ago

@jlaw9 Can we close this issue? Which part of the code handles it?