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Mye-InfoBank / scRAFIKI

A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
BSD 3-Clause "New" or "Revised" License
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Add QC metrics to cellxgene #33

Closed nictru closed 8 months ago

nictru commented 8 months ago

QC metrics like

Note that only cell-wise QC metrics can be showed in cellxgene, not gene-wise

nictru commented 8 months ago

This function is useful for calculating the metrics