FEATURE: events in transient Markov analysis

MyersResearchGroup / iBioSim

iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importing and exporting models specified using the Systems Biology Markup Language (SBML). iBioSim also supports the Synthetic Biology Open Language (SBOL), an emerging standard for information exchange in synthetic biology.

http://www.async.ece.utah.edu/ibiosim

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FEATURE: events in transient Markov analysis #12

Open buggsley opened 8 years ago

buggsley commented 8 years ago

Events can be translated to LPN transitions with delays, and they can be fired during Markov analysis.

Details of what would be allowed still need to be worked out.

Likely needs to be a very deterministic event.

buggsley commented 8 years ago

Now there is an LPN in SBML converter to LPN object model as well as a GRN to LPN translator. The GRN to LPN translator should also translate the LPN objects in SBML into LPNs.