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MyersResearchGroup / iBioSim

iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importing and exporting models specified using the Systems Biology Markup Language (SBML). iBioSim also supports the Synthetic Biology Open Language (SBOL), an emerging standard for information exchange in synthetic biology.
http://www.async.ece.utah.edu/ibiosim
Apache License 2.0
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Losing Reaction Equation #614

Open LukasBuecherl opened 3 years ago

LukasBuecherl commented 3 years ago

When I look at a reaction of my model and close the pop-up window using the ok button, I lose the define function. The kinetic law gets replace with a default reaction.

I will attach a short clip showing the problem and my model.

Issue.zip

cjmyers commented 3 years ago

The problem is that when the SBO is Genetic Production, the kinetic law is rebuilt when OK is pressed. This is correct if you built model, but NOT if you generated it by model conversion. The solution should be to not allow editing either when generated by model conversion (best) OR has SBO term Genetic Production (coarse solution).