N8-CIR-Bede / documentation

Documentation for the N8CIR Bede Tier 2 HPC faciltiy
https://bede-documentation.readthedocs.io/en/latest/
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Cleanup module versions to match current (2024-02-28) modules #175

Closed ptheywood closed 4 months ago

ptheywood commented 9 months ago

Remove modules that were RHEL 7 only, leaving just RHEL 8 modules.

Newer versions of modules up to 2024-02-28 have been added.

ptheywood commented 4 months ago

Module avail as of 2024-02-28, with the projects loaded

module avail --long
- Package -----------------------------+- Versions -+- Last mod. ------
/projects/ibm-collaboration/modules:

/projects/leeds/modules:
ctffind/4.1.14                                       2022/07/01  7:19:05
relion/3.1.3                                         2022/07/01  7:19:06
relion/4.0-beta                                      2022/07/01  7:19:06

/projects/hecbiosim/modules:
amber/20                                             2022/03/04 14:15:11
amber/20-large-system-mod                            2022/03/04 14:14:58
gromacs/2020.4-plumed-2.6.2-rhel8                    2022/04/11 16:34:55
gromacs/2021.1-plumed-2.7.2-rhel8                    2021/08/17 14:44:43
gromacs/2021.2-plumed-2.7.1-rhel8                    2021/10/12 11:51:15
gromacs/2021.2-plumed-2.7.2-rhel8                    2021/08/17 14:45:55
gromacs/2021.4-plumed-2.7.3-rhel8                    2022/01/10 17:27:11
gromacs/2021.5-rhel8                                 2022/03/03 12:45:13
gromacs/2022.0-rhel8                                 2022/04/11 12:38:39
gromacs/2022.2                                       2022/08/04 10:13:48
gromacs/2023.1                                       2023/05/26 13:02:48
namd/2.14-smp                                        2020/12/17 12:28:44
namd/3.0-alpha12-singlenode                          2022/07/19 14:14:21
namd/3.0-alpha9-singlenode                           2021/08/18 14:09:51
openmm/7.4.1-python3.7                               2021/02/18 16:29:57
plumed/2.6.2-rhel8                                   2021/08/16  9:59:15
plumed/2.7.1-rhel8                                   2021/10/12  9:55:05
plumed/2.7.2-rhel8                                   2021/08/16 10:00:42
plumed/2.7.3-rhel8                                   2022/01/10 15:26:16
plumed/2.8.0-rhel8                                   2022/03/02 17:45:44

/opt/software/builder/modules/projects:
hecbiosim                                            2020/12/16 16:27:03
ibm-collaboration                                    2021/04/30 13:08:32
leeds                                                2022/06/10 12:09:57

/opt/software/builder/modules/infrastructure:
slurm/dflt                               default     2021/06/14  9:55:05
tools/1.2                                            2021/06/23 13:53:17
user                                                 2021/06/23 14:27:09

/opt/software/builder/modules/developers/tools:
cmake/3.18.4                             default     2021/06/14 15:12:45
make/4.3                                 default     2021/06/14 15:13:09
nsight-compute/2020.2.1                  default     2021/07/29 17:48:56
nsight-compute/2022.1.0                              2022/02/02 13:26:51
nsight-compute/2022.4.1                              2023/02/17 10:36:31
nsight-systems/2020.3.1                  default     2021/07/29 17:49:14
nsight-systems/2022.1.1                              2022/02/02 13:40:12
nsight-systems/2023.1.1                              2023/02/17 10:36:24

/opt/software/builder/modules/developers/compilers:
cuda/10.1.243                                        2021/06/15 11:15:10
cuda/10.2.89                                         2021/06/15  9:40:18
cuda/11.2.2                                          2021/12/09 17:43:51
cuda/11.3.1                                          2021/06/10 14:21:15
cuda/11.4.1                              default     2021/08/13 15:28:26
cuda/11.5.1                                          2022/01/14  9:06:04
cuda/12.0.1                                          2023/02/07 11:00:57
gcc/10.2.0                                           2021/06/15 16:26:51
gcc/12.2                                             2023/01/24 13:14:30
gcc/8.4.0                                            2021/06/15 16:27:05
gcc/native                               default     2021/06/14 14:56:10
llvm/11.0.0                              default     2021/06/17 18:44:05
nvhpc/21.5                               default     2021/06/21 16:58:51
nvhpc/22.1                                           2022/02/01 10:25:27
nvhpc/23.1                                           2023/02/17 10:29:12
r/4.0.3                                  default     2021/06/17 13:16:37
xl/16.1.1                                default     2021/09/10 10:56:17

/opt/software/builder/modules/developers/libraries:
boost/1.74.0                             default     2021/06/21  8:28:03
boost/1.81.0                                         2023/02/28 11:01:12
essl/6.2                                 default     2022/09/22 16:02:40
fftw/3.3.8                               default     2021/06/21 11:17:44
hdf5/1.10.7                              default     2021/06/21  9:26:25
mvapich2/2.3.5-2                         default     2021/06/21  8:28:03
mvapich2-gdr/2.3.6                       default     2022/07/07 13:38:00
netcdf/4.7.4                             default     2021/06/21 10:32:22
openblas/0.3.10                          default     2021/06/21  8:28:03
openmpi/4.0.5                            default     2021/06/21  8:28:03
vtk/9.0.1                                default     2021/06/21  8:28:51

/opt/software/builder/modules/applications:
grace/5.1.25                             default     2021/11/12  9:48:48