N8-CIR-Bede / documentation

Documentation for the N8CIR Bede Tier 2 HPC faciltiy
https://bede-documentation.readthedocs.io/en/latest/
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Multi-GPU/Multi-Node Benchmarks for common applications #90

Open ptheywood opened 2 years ago

ptheywood commented 2 years ago

During the user-group meeting it was suggested that providing benchmarking (and example job submission scripts) for single-GPU, multi-GPU and multi-node multi-GPU.

HECBioSim have some benchmarking for AMBER/GROMACS etc. on their website, for single-node single/mulit-gpu benchmarks, which could be linked references on the amber/gromacs page(s).

loveshack commented 1 year ago

At least if you run a series of cases, multi-node (even multi-GPU) gromacs/amber normally isn't useful if the problem doesn't require it, because of scheduling throughput, even with perfect scaling.