This project aims to create tutorials on how to work with DICOM annotations in pathology whole-slide images (WSIs). We will focus on region annotations stored as DICOM Structured Reports (SR) for a dataset of Rhabdomyosarcoma, which was recently ingested into the Imaging Data Commons (IDC).
If time permits we will continue working on nuclei annotations stored as DICOM Microscopy Bulk Simple Annotations (MBSA). This work was started in the last project week in Montreal, but hindered by technical issues (see here).
Objective
Objective A: Have a Colaboratory notebook ready that explains work with DICOM SR and uses the annotations for some exemplary use case.
Objective B (optional): Have a Colaboratory notebook ready that exemplifies work with DICOM MBSA.
Approach and Plan
Set-up Google Healthcare DICOM store holding the available DICOM SR annotations.
Draft Status
Draft - team will hold off on page creation
Category
Segmentation / Classification / Landmarking
Presenter Location
In-person
Key Investigators
Project Description
This project aims to create tutorials on how to work with DICOM annotations in pathology whole-slide images (WSIs). We will focus on region annotations stored as DICOM Structured Reports (SR) for a dataset of Rhabdomyosarcoma, which was recently ingested into the Imaging Data Commons (IDC). If time permits we will continue working on nuclei annotations stored as DICOM Microscopy Bulk Simple Annotations (MBSA). This work was started in the last project week in Montreal, but hindered by technical issues (see here).
Objective
Approach and Plan
Progress and Next Steps
Illustrations
No response
Background and References
No response