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NA-MIC / ProjectWeek

Website for NA-MIC Project Weeks
https://projectweek.na-mic.org
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Project: Investigate MONAI generative modeling for Imaging Data Commons #975

Closed pieper closed 7 months ago

pieper commented 7 months ago

Draft Status

Ready - team will start page creating immediately

Category

Quantification and Computation

Presenter Location

In-person

Key Investigators

Project Description

Generative learning refers to a class of techniques that process large amounts of training data into models that can be used for a variety of tasks such as synthetic data generation, image compression, enhancing resolution, classifying images, and content based retrieval. Recently a generative package has been added to the open source MONAI software.

This project will explore the application of MONAI generative tools to data on the NCI Imaging Data Commons.

Objective

  1. Study the existing material and collect information from other interested parties
  2. Make plans about what experiments would be interesting
  3. If possible do some small experiments to better understand what's possible and what effort and resources would be required to scale up

Approach and Plan

  1. Explore creating an IDCDataset compatible with MONAI Datasets using idc-index to fetch data
  2. Investigate adapting tutorial code to work with IDC data
  3. Try running some small tests, such as running the superresolution tutorials on IDC data
  4. Document how IDC can be used with MONAI for research

Progress and Next Steps

  1. Describe specific steps you have actually done.

Illustrations

No response

Background and References

github-actions[bot] commented 7 months ago

Project Page Pull Request Creation

:white_check_mark: COMPLETED: See https://github.com/NA-MIC/ProjectWeek/pull/976