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NAL-i5K / GFF3toolkit

Python programs for processing GFF3 files
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Testpy3 #96

Closed ShangYuChiang closed 5 years ago

ShangYuChiang commented 5 years ago

Update files as below: .travis.yml gff3tool/bin/gff3_merge.py gff3tool/bin/gff3_sort.py

codecov[bot] commented 5 years ago

Codecov Report

Merging #96 into master will increase coverage by 0.06%. The diff coverage is 5.11%.

Impacted file tree graph

@@            Coverage Diff            @@
##           master     #96      +/-   ##
=========================================
+ Coverage    6.78%   6.84%   +0.06%     
=========================================
  Files          27      27              
  Lines        5014    5009       -5     
=========================================
+ Hits          340     343       +3     
+ Misses       4674    4666       -8
Impacted Files Coverage Δ
gff3tool/lib/ERROR/ERROR.py 100% <ø> (ø) :arrow_up:
gff3tool/bin/gff3_fix.py 12.9% <ø> (ø) :arrow_up:
gff3tool/bin/gff3_merge.py 6.02% <0%> (ø) :arrow_up:
gff3tool/lib/inter_model/inter_model.py 15.07% <0%> (-0.67%) :arrow_down:
gff3tool/lib/single_feature/single_feature.py 17.2% <0%> (-0.89%) :arrow_down:
gff3tool/lib/gff3_merge/revision.py 3.48% <0%> (ø) :arrow_up:
gff3tool/lib/function4gff/function4gff.py 18.18% <0%> (-0.92%) :arrow_down:
gff3tool/lib/gff3_merge/merge.py 3.82% <0%> (+0.04%) :arrow_up:
gff3tool/lib/gff3_merge/auto_replace_tag.py 5.02% <0%> (-0.92%) :arrow_down:
gff3tool/bin/gff3_QC.py 10.67% <0%> (ø) :arrow_up:
... and 14 more

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mpoelchau commented 5 years ago

I tested gff3_ID_generator in python3 - it works!