Closed mpoelchau closed 4 years ago
Fixed, closing.
Note that wigtobigwig is not included in setup.py. On Ceres we can bypass this by using the installed kenttools (module load kentutils
). I'll update the example slurm command file that we supply to include this.
Modified modules to load in https://github.com/NAL-i5K/NAL_RNA_seq_annotation_pipeline/commit/e71e6460a3b5c42af4216c111d3c2bbbc5afb82c
We now also include bam-to-bigwig.py, wigtobigwig, and regtools in the pipeline. Is it possible to add these to setup.py?