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NAL-i5K / NAL_RNA_seq_annotation_pipeline

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Add new programs to setup.py if possible #37

Closed mpoelchau closed 4 years ago

mpoelchau commented 4 years ago

We now also include bam-to-bigwig.py, wigtobigwig, and regtools in the pipeline. Is it possible to add these to setup.py?

mpoelchau commented 4 years ago

Fixed, closing.

mpoelchau commented 3 years ago

Note that wigtobigwig is not included in setup.py. On Ceres we can bypass this by using the installed kenttools (module load kentutils). I'll update the example slurm command file that we supply to include this.

mpoelchau commented 3 years ago

Modified modules to load in https://github.com/NAL-i5K/NAL_RNA_seq_annotation_pipeline/commit/e71e6460a3b5c42af4216c111d3c2bbbc5afb82c