The RNAseq_annotate.py program downloads a lot of large files, which are not needed after the program has finished (except for debugging purposes).
Everything should be deleted, except for the final output files; the log files (basically anything ending in .log or .errlog, including in the SRR subdirectories); and source.txt.
It would also be nice if there were a 'debug' argument that would turn the delete behavior off (so, deleting the files would be the default).
Okay!
I will also remove .hs2 files and normalized fastq files after the process.
Users can remove option "-t" in sbatch.sh file if they don't want to keep them.
The RNAseq_annotate.py program downloads a lot of large files, which are not needed after the program has finished (except for debugging purposes).
Everything should be deleted, except for the final output files; the log files (basically anything ending in .log or .errlog, including in the SRR subdirectories); and source.txt.
It would also be nice if there were a 'debug' argument that would turn the delete behavior off (so, deleting the files would be the default).