The pipeline has problems processing data from any 454 instrument (e.g. 454 GS FLX, 454 GS Junior, 454 GS FLX Titanium, but could also be more) that have a single-end layout. Similar to #46, we need to exclude this data type from the download_sra_metadata.py results.
Example error: FileNotFoundError: [Errno 2] No such file or directory: '/project/nal_genomics/shelly.chiang/rnaseq_Hyaazt/2021-06-15-11-54-01/SRR687323/SRR687323_2_fastqc.zip'
The pipeline has problems processing data from any 454 instrument (e.g. 454 GS FLX, 454 GS Junior, 454 GS FLX Titanium, but could also be more) that have a single-end layout. Similar to #46, we need to exclude this data type from the download_sra_metadata.py results.
Example error:
FileNotFoundError: [Errno 2] No such file or directory: '/project/nal_genomics/shelly.chiang/rnaseq_Hyaazt/2021-06-15-11-54-01/SRR687323/SRR687323_2_fastqc.zip'
Libraries that have this error: