NAL-i5K / NAL_RNA_seq_annotation_pipeline

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Single end data fail to normalize #59

Open amcooksey opened 1 year ago

amcooksey commented 1 year ago

RNAseq_annotate.py throws this error for single end data:

Normalizing ... Traceback (most recent call last): File "/opt/RNA_repo/rnannot/RNAseq_annotate.py", line 394, in with open(fname, 'r') as infile: FileNotFoundError: [Errno 2] No such file or directory: '/project/nal_genomics/amanda.cooksey/rnaseq_schgre/2023-04-18-17-41-30/SRR17978912/normalized.fastq'