NAL-i5K / Organism_Onboarding

A workflow to make organism onboarding pipeline easy to handle as an I/O pipeline
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Update linkouts to analysis pages in readme files #117

Closed mpoelchau closed 2 years ago

mpoelchau commented 3 years ago

Will need to evaluate new URL settings in Tripal3 first, after fixes to tripal eutils.

mpoelchau commented 2 years ago

Files to modify:

What to replace:

The readme output would look as follows for the final-workflow-short.yml example file:

The following files were retrieved from NCBI on 2021-22-9:
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/298/625/GCF_001298625.1_SEUB3.0/GCF_001298625.1_SEUB3.0_genomic.fna.gz

Information about this dataset can be found here: 
Information about the publications of this dataset can be found here: 'Not published, please follow Ft. Lauderdale/Toronto guidelines for data reuse'
mpoelchau commented 2 years ago

Fixed in #120