This is a modification to flow_dispatch. We need to add a symlink to the analyses directory from the jbrowse directory. The command would look something like this:
This is very similar to flow_dispatch/link_bigwig.cwl - it could be copied and modified to use analyses instead of bigwig. The new cwl file would need to be added to flow_dispatch/workflow.cwl.
This is a modification to flow_dispatch. We need to add a symlink to the analyses directory from the jbrowse directory. The command would look something like this:
ln -si ../../scaffold/analyses -t $(inputs.PATH[0])/$(inputs.tree[0])/$(inputs.tree[1])/jbrowse/data
This is very similar to
flow_dispatch/link_bigwig.cwl
- it could be copied and modified to use analyses instead of bigwig. The new cwl file would need to be added toflow_dispatch/workflow.cwl
.