In CreateSymlink-workflow.cwl, there is a step that gzips the scaffold file. This can be a bit annoying if you have to re-run the workflow - you need to unzip the file again in order for the workflow to succeed.
It would be nice if the step scaffold_gzip were conditional. We'd have to think creatively about how to implement this. It would be best if the scaffold_gzip step were only skipped if there was already a gzipped scaffold file present.
mpoelchau
commented
2 years ago
In CreateSymlink-workflow.cwl, there is a step that gzips the scaffold file. This can be a bit annoying if you have to re-run the workflow - you need to unzip the file again in order for the workflow to succeed.
It would be nice if the step scaffold_gzip were conditional. We'd have to think creatively about how to implement this. It would be best if the scaffold_gzip step were only skipped if there was already a gzipped scaffold file present.