improve createorganism.cwl error handling

NAL-i5K / Organism_Onboarding

A workflow to make organism onboarding pipeline easy to handle as an I/O pipeline

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improve createorganism.cwl error handling #92

Closed mpoelchau closed 4 years ago

mpoelchau commented 4 years ago

Currently, createorganism.cwl exits with a success message only if there is error output from the program - not if the organism was actually successfully created.

One solution is to have the workflow cat the output of the error log after it was generated. Then the user would see whether or not the command failed or succeeded.

HsiuKangHuang commented 4 years ago

Okay! I add a step "cat_createOrganism.log" after the step createOrganism in apolloServer-workflow.cwl.

mpoelchau commented 4 years ago

Closed via #90.