New organism: Bradysia coprophila - Githubissues

NAL-i5K / general_issues

for issues and discussions not tied to a specific repository

2 stars 0 forks source link

New organism: Bradysia coprophila #165

Closed mpoelchau closed 2 years ago

mpoelchau commented 3 years ago

RefSeq accession: https://www.ncbi.nlm.nih.gov/assembly/GCF_014529535.1/ Publication: https://doi.org/10.1101/2020.02.24.963009

See https://gitlab.com/i5k_Workspace/workspace_roadmap/-/wikis/Adding-an-organism-CWL-update for full description of each task (requires gitlab login)

[x] 1. Set up data directories and get data
[x] 2. Verify data
[x] 3. Data wrangling for Apollo setup
[x] 4. Apollo2 setup
[x] 5. Tripal setup
[x] 6. BLAST setup
[x] 7. HMMER setup
[x] 8. data downloads setup
[x] 9. Final Test List
[x] 10. Advertising

suryasaha commented 2 years ago

Tripal3 pages, data downloads and Apollo look fine. Genomics Workspace results and jbrowse linkouts look good. This can be closed @mpoelchau

mpoelchau commented 2 years ago

Still needs data downloads link to functional annotations, I am currently blocked by a permissions issue.