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More RNA-Seq updates #211

Closed mpoelchau closed 1 year ago

mpoelchau commented 1 year ago

We have a few more stragglers to generate RNA-Seq for. We'll need to do the mapping per the usual documentation, and add the data to the browsers on the servers.

Species name Assembly to use
Diachasma alloeum GCF_001412515.1
Laodelphax striatellus GCA_003335185.2
Latrodectus hesperus GCA_000697925.1
Loxosceles_reclusa GCA_001188405.1
Habropoda_laboriosa GCA_001263275.1
Mayetiola_destructor https://i5k.nal.usda.gov/data/Arthropoda/maydes-%28Mayetiola_destructor%29/Current%20Genome%20Assembly/1.Genome%20Assembly/Mayetiola_destructor_v1.0/Scaffolds/hf_scaffolds_agripestbase_ids.fa.gz
amcooksey commented 1 year ago

Hablab: hard to find an example in the browser. this works: KQ414666.1:8630117..8631556 (1.44 Kb)

mpoelchau commented 1 year ago

Thanks @amcooksey !