Closed amcooksey closed 4 months ago
@amcooksey how are things going with this ticket? FYI it's an Ag100Pest update with a bunch of manual annotations...
looks like this one got lost in the shuffle. i will start the update this week.
updated apollo except for the manual annotations. liftoff has been run. the files are here: /app/data/other_species/amytra/ilAmyTran1.1/scaffold/analyses/manual-curation AND /project/nal_genomics/amanda.cooksey/manual_annotations_and_OGS/amytra/ilAmyTran1.1/scaffold/analyses/manual-curation
update is be complete now except for the manual annotations.
@amcooksey the genome assembly page is actually a genome annotation page. This is why this assembly didn't show up in the genome list. I'm not sure there's a way to change the category - you may just have to create a new page and delete the old one. https://i5k.nal.usda.gov/bio_data/1394540
Made a new genome assembly page for Amyelois transitella genome assembly ilAmyTran1.1 (GCF_032362555.1) and deleted the old one.
manual annotations and metadata added. phase needs to be reconciled to the original liftoff phase for these two transcripts: 53e0df20-1b26-476c-9dbc-8607f56b034d 391515ed-e86a-437d-838d-1f012e209d5e
Change old content
Add new content to i5k Workspace applications
See https://gitlab.com/i5k_Workspace/workspace_roadmap/-/wikis/Adding-an-organism-CWL-update for full description of each task (requires gitlab login)
Tasks on Ceres:
Tasks on the NAL servers: