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Bio_data URLs need to be replaced with data downloads links #260

Closed mpoelchau closed 5 months ago

mpoelchau commented 5 months ago

I realized we have a backlog of analysis pages that still point to a tripal page as the source instead of the appropriate data downloads page. @amcooksey sorry, this is a bit of a tedious task - could you update the source uri field on the following pages with the proper data downloads link?

URL name uri to change
https://i5k.nal.usda.gov/bio_data/836637 Habropoda laboriosa ASM126327v1 GenBank Annotations /bio_data/836637
https://i5k.nal.usda.gov/bio_data/836647 Dufourea novaeangliae NCBI Annotation Release 100 /bio_data/836654
https://i5k.nal.usda.gov/bio_data/836653 NCBI Bactrocera oleae Annotation Release 100 /bio_data/836648
https://i5k.nal.usda.gov/bio_data/836657 Amyelois transitella NCBI Annotation Release 100 /bio_data/836640
https://i5k.nal.usda.gov/bio_data/836659 NCBI Tribolium castaneum Annotation Release 103 /bio_data/836660
https://i5k.nal.usda.gov/bio_data/836670 NCBI Nicrophorus vespilloides Annotation Release 100 /bio_data/836669
https://i5k.nal.usda.gov/bio_data/836673 Dufourea novaeangliae Annotations v1.1 /bio_data/836654
https://i5k.nal.usda.gov/bio_data/836674 NCBI Bemisia tabaci Annotation Release 100 /bio_data/836685
https://i5k.nal.usda.gov/bio_data/836684 Bemisia tabaci annotations MEAM1_v1.2 /bio_data/836685
https://i5k.nal.usda.gov/bio_data/836686 NCBI Aethina tumida Annotation Release 100 /bio_data/836677
https://i5k.nal.usda.gov/bio_data/836687 Clitarchus hookeri annotations Clitarchus_hookeri_annotation /bio_data/836773
https://i5k.nal.usda.gov/bio_data/836689 NCBI Bombus terrestris Annotation Release 102 /bio_data/836690
https://i5k.nal.usda.gov/bio_data/836693 NCBI Bombus impatiens Annotation Release 102 /bio_data/836692
https://i5k.nal.usda.gov/bio_data/836702 Gerris buenoi annotations OGSv1.0 /bio_data/836603
https://i5k.nal.usda.gov/bio_data/836704 Holacanthella duospinosa annotations Holacanthella_duospinosa_annotation 1.0 /bio_data/836700
https://i5k.nal.usda.gov/bio_data/836710 NCBI Drosophila bipectinata Annotation Release 101 /bio_data/836716
https://i5k.nal.usda.gov/bio_data/836711 NCBI Drosophila elegans Annotation Release 101 /bio_data/836681
https://i5k.nal.usda.gov/bio_data/836712 NCBI Drosophila eugracilis Annotation Release 101 /bio_data/836718
https://i5k.nal.usda.gov/bio_data/836713 NCBI Drosophila ficusphila Annotation Release 101 /bio_data/836706
https://i5k.nal.usda.gov/bio_data/836714 NCBI Drosophila rhopaloa Annotation Release 101 /bio_data/836707
https://i5k.nal.usda.gov/bio_data/836715 NCBI Drosophila takahashii Annotation Release 101 /bio_data/836717
https://i5k.nal.usda.gov/bio_data/836719 NCBI Drosophila kikkawai Annotation Release 101 /bio_data/836695
https://i5k.nal.usda.gov/bio_data/836725 Leptinotarsa decemlineata annotations lepdec_OGSv1.2 /bio_data/836724
https://i5k.nal.usda.gov/bio_data/836726 Leptinotarsa decemlineata annotations lepdec_OGSv1.1 /bio_data/836573
https://i5k.nal.usda.gov/bio_data/836728 Melipona quadrifasciata annotations GCA_001276565.1_ASM127656v1 /bio_data/836663
https://i5k.nal.usda.gov/bio_data/836749 Blattella germanica annotations OGSv1.2 /bio_data/836743
https://i5k.nal.usda.gov/bio_data/836751 NCBI Hyalella azteca Annotation Release 100 /bio_data/836746
https://i5k.nal.usda.gov/bio_data/836755 NCBI Cimex lectularius Annotation Release 101 /bio_data/836752
https://i5k.nal.usda.gov/bio_data/836756 NCBI Athalia rosae Annotation Release 102 /bio_data/836787
https://i5k.nal.usda.gov/bio_data/836757 Frankliniella occidentalis annotations fraocc_OGSv1.0 /bio_data/836586
https://i5k.nal.usda.gov/bio_data/836769 NCBI Nylanderia fulva Annotation Release 100 /bio_data/836767
https://i5k.nal.usda.gov/bio_data/836803 Locusta migratoria annotations JAMg_OGSv1 /bio_data/836729
https://i5k.nal.usda.gov/bio_data/836828 Apis mellifera annotations amel_OGSv3.3 /bio_data/836744
https://i5k.nal.usda.gov/bio_data/836595 Bactrocera oleae manual annotations MG-11-2019 /bio_data/836664
https://i5k.nal.usda.gov/bio_data/836636 NCBI Microplitis demolitor Annotation Release 101 /bio_data/836651
https://i5k.nal.usda.gov/bio_data/836639 Megachile rotundata NCBI Annotation Release 101 /bio_data/836655
https://i5k.nal.usda.gov/bio_data/836661 Tribolium castaneum annotations TCAS_OGSv3 /bio_data/836660
https://i5k.nal.usda.gov/bio_data/836667 NCBI Diachasma alloeum Annotation Release 100 /bio_data/836668
https://i5k.nal.usda.gov/bio_data/836680 NCBI Eufriesea mexicana Annotation Release 100 /bio_data/836690
https://i5k.nal.usda.gov/bio_data/836683 Euglossa dilemma annotations v1.0 /bio_data/836682
https://i5k.nal.usda.gov/bio_data/836697 Heliothis virescens annotations GCA_002382865.1_K63_refined_pacbio_genomic 1 /bio_data/836688
https://i5k.nal.usda.gov/bio_data/836709 NCBI Drosophila biarmipes Annotation Release 101 /bio_data/836708
https://i5k.nal.usda.gov/bio_data/836734 Gerris buenoi annotations OGSv1.1 /bio_data/836607
https://i5k.nal.usda.gov/bio_data/836743 Blattella germanica annotations OGSv1.0 /bio_data/836641
https://i5k.nal.usda.gov/bio_data/836761 Oncopeltus fasciatus annotations GCA_000696205.1_Ofas_1.0 /bio_data/836762
https://i5k.nal.usda.gov/bio_data/836768 Halyomorpha halys annotations OGSv1.0 /bio_data/836821
https://i5k.nal.usda.gov/bio_data/836783 Halyomorpha halys annotations halhal_OGSv1.1 /bio_data/836776
https://i5k.nal.usda.gov/bio_data/836831 Bradysia coprophila annotations Bradysia_coprophila.Bcop_v1.0 /bio_data/836829
https://i5k.nal.usda.gov/bio_data/836664 JAMg Official Gene Set v1 /bio_data/836648
https://i5k.nal.usda.gov/bio_data/836676 Official Gene Set v1.0 /bio_data/836669
https://i5k.nal.usda.gov/bio_data/836691 Eufriesea mexicana v1.1 /bio_data/836690
https://i5k.nal.usda.gov/bio_data/836727 Mext_OGS_v1.0 /bio_data/836806
https://i5k.nal.usda.gov/bio_data/836672 BGER_v0.6.2 gene predictions /bio_data/836641
https://i5k.nal.usda.gov/bio_data/954998 Ladona fulva annotations Official Gene Set ladful_OGSv1.0 /bio_data/954997
https://i5k.nal.usda.gov/bio_data/1193329 Ceratitis capitata Official Gene Set OGSv1 https://i5k.nal.usda.gov/bio_data/836629
https://i5k.nal.usda.gov/bio_data/836732 Cephus cinctus Transposable Elements /bio_data/836809
https://i5k.nal.usda.gov/bio_data/836703 Heliothis virescens RNA-Seq /bio_data/836688
mpoelchau commented 5 months ago

Thanks! Confirmed.