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NAL-i5K / tripal_eutils

ncbi loader via the eutils interface
GNU General Public License v3.0
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missing preview linkouts #150

Closed bradfordcondon closed 5 years ago

bradfordcondon commented 5 years ago

linkouts are still missing for the following:

project

biosample

When a DB doesnt make a lot of sense (for example, Oregon State University:DNA_leaves for SAMN00120060) it's confusing to see it listed as a cross reference

assembly

The data in the analysis record: what happens with the "accessions" ?

screen shot 2019-02-11 at 12 06 39 pm

bradfordcondon commented 5 years ago

im not going to add in support for non ncbi accessions out of the box: they'll work if a user creates a DB matching it (IE BGI).

We now build linkouts for the other internal missing links.

screen shot 2019-02-11 at 3 11 54 pm
bradfordcondon commented 5 years ago

Final step: get the "accessions" item in assemblies going. This works, BUT, all the linkouts to genbank and refseq are dead. Problem likely lives in the parser.

screen shot 2019-02-11 at 3 22 54 pm 
    <RsUid>557018</RsUid>
    <GbUid>238288</GbUid>

these RsUid and GbUids are not refseq/genbank accessions they are accessions to assembly still (gross).

resolved by attaching them with db: assembly, but including refseq/genbank in the string displayed to user.