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NAL-i5K / tripal_eutils

ncbi loader via the eutils interface
GNU General Public License v3.0
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chado API #202

Open bradfordcondon opened 5 years ago

bradfordcondon commented 5 years ago

as per #200 we want to use the chado API for all queries. this means any db_select() statements should be redone.

bradfordcondon commented 5 years ago

cases we can't implement and are waiting on the tripal core issue (because of joins typically):

EUtils::organismQuery, EUtils::lookupNcbiInChado

All other db_query and db_inserts should be converted to chado API.

bradfordcondon commented 5 years ago

this was done but waiting on pR in core to fix the chado query object.

https://github.com/tripal/tripal/pull/867