NISH1001 commented 2 years ago

(This is an old code which I've been using to select Best candidate from a cluster).

Major changes

Implements bps_numerical.feature_selection.BestCandidateFeatureSelector based on clusters formed
Implements shap-based feature scorer at bps_numerical.classification.feature_scorers.ShapBasedPhenotypeFeatureScorer

Minor changes

Improvements of plotting tools at misc
Addition of misc.datatools.LoadSaveMixin for quick load/save of custom components. This mixin can now enable the saving & loading of clustering, feature selection, and gene ranking components.
Speeds up CorrelationClusterer clustering component by caching the distance matrix (can be provided externally through the constructor)

NISH1001 commented 2 years ago

Note: Better to squash before merging all these many commits... :/

NISH1001 commented 1 year ago

Gonna close this PR for a new "big" PR later this week.