Switch ipynb to myst markdown

NASA-NAVO / navo-workshop

Tutorial notebooks for how to use PyVO to access NASA and other data in Python.

https://NASA-NAVO.github.io/navo-workshop

BSD 3-Clause "New" or "Revised" License

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Switch ipynb to myst markdown #135

Closed zoghbi-a closed 11 months ago

zoghbi-a commented 11 months ago

[Re-doing] This PR addresses issue #69. It switches the notebooks files (.ipynb) to markdown, which can be opened with jupyter notebook (or inside jupyterlab) when jupytext is installed.

The .ipynb files were converted to .md files
Added jupytext as a dependency (in envionment.yaml and check_env.py)

tomdonaldson commented 11 months ago

Re: the temporary fix mast table name (https://github.com/NASA-NAVO/navo-workshop/pull/135/commits/69631cb4de16e6bb150624bcf62a961cbd616446):

The table name has been reverted to its previous capitalization, so is now dbo.DetailedCatalog again.

bsipocz commented 11 months ago

Thanks @tomdonaldson! I'll remove that temporary commit when I come up with a solution for windows.

bsipocz commented 11 months ago

The windows failure was due to a conda vs pip install issue, basically the system didn't let pip reinstall a package executable installed by conda. Workaround was to pip install it in the environment file, too.

However, in the meantime there are new notebook failures which also present on main. I don't yet see whether they are transient, and would suggest to wait a day and restart things and report upstream if they will be still present.

bsipocz commented 11 months ago

Thanks @zoghbi-a!