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NASA-PDS / deep-archive

PDS Open Archival Information System (OAIS) utilities, including Submission Information Package (SIP) and Archive Information Package (AIP) generators
https://nasa-pds.github.io/deep-archive/
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Try to create a package #87

Closed tloubrieu-jpl closed 3 years ago

tloubrieu-jpl commented 3 years ago

Describe the bug Error when using command

To Reproduce With same input file: bundle.xml.zip

Gary I&T test: $ pds-deep-archive -s PDS_RNG -b https://rings.edu/PDS/data/PDS4/ testDeep/uranus_occ_support/bundle.xml INFO 👟 PDS Deep Archive, version 0.2.2 Traceback (most recent call last): File "/home/gxchen/.virtualenvs/pds-deep-archive/bin/pds-deep-archive", line 11, in load_entry_point('pds.deeparchive==0.2.2', 'console_scripts', 'pds-deep-archive')() File "/home/gxchen/.virtualenvs/pds-deep-archive/lib64/python3.6/site-packages/pds/aipgen/main.py", line 102, in main comprehendDirectory(os.path.dirname(os.path.abspath(args.bundle.name)), con) File "/home/gxchen/.virtualenvs/pds-deep-archive/lib64/python3.6/site-packages/pds/aipgen/utils.py", line 124, in comprehendDirectory tree = parseXML(xmlFile) File "/home/gxchen/.virtualenvs/pds-deep-archive/lib64/python3.6/site-packages/pds/aipgen/utils.py", line 181, in parseXML return etree.parse(f) File "src/lxml/etree.pyx", line 3521, in lxml.etree.parse File "src/lxml/parser.pxi", line 1859, in lxml.etree._parseDocument File "src/lxml/parser.pxi", line 1885, in lxml.etree._parseDocumentFromURL File "src/lxml/parser.pxi", line 1789, in lxml.etree._parseDocFromFile File "src/lxml/parser.pxi", line 1177, in lxml.etree._BaseParser._parseDocFromFile File "src/lxml/parser.pxi", line 615, in lxml.etree._ParserContext._handleParseResultDoc File "src/lxml/parser.pxi", line 725, in lxml.etree._handleParseResult File "src/lxml/parser.pxi", line 654, in lxml.etree._raiseParseError File "/home/gxchen/pds-test/PDS4test.build10b/testDeep/uranus_occ_support/._bundle.xml", line 1 lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1

Thomas attempt to reproduce

% pds-deep-archive -s PDS_RNG -b https://rings.edu/PDS/data/PDS4/ ~/Downloads/bundle.xml
INFO 👟 PDS Deep Archive, version 0.2.2 WARNING ⚠️ File SystemSpecificationV1.0.pdf referenced by /Users/loubrieu/Downloads/SystemSpecificationV1.0.xml does not exist; ignoring WARNING ⚠️ File DataAdministrationPlan-1990 referenced by /Users/loubrieu/Downloads/DataAdministrationPlan-1990.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/bundle.xml does not exist; ignoring WARNING ⚠️ File SystemDeliveryReview-1990.pdf referenced by /Users/loubrieu/Downloads/SystemDeliveryReview-1990.xml does not exist; ignoring WARNING ⚠️ File SPIDSv1.1-1988.pdf referenced by /Users/loubrieu/Downloads/SPIDSv1.1-1988.xml does not exist; ignoring WARNING ⚠️ File SystemRequirementsReview-1986.pdf referenced by /Users/loubrieu/Downloads/SystemRequirementsReview-1986.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/a16lsm_raw_arcsav_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/a17fuvs_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/a15hfe_calibrated_arcsav_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/a15hfe_raw_arcsav_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/a15photosupportdata_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/a17lsg_raw_arcsav_bundle.xml does not exist; ignoring WARNING ⚠️ File README.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/a15_17_hfe_concatenated_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/a12sws_raw_arcsav_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/a17photosupportdata_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/a15side_ccig_raw_arcsav_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/a17hfe_calibrated_arcsav_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/a15oms_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/a17hfe_raw_arcsav_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/a16oms_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/pioneer89cdd_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/a16_photosupportdata_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/a12side_ccig_raw_arcsav_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/apollodoc_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_Apollo_Bundles_reserve_20200316/aaaSubmitted_by_GEO_active_20200330/apollo_bundles/pioneerdoc_bundle.xml does not exist; ignoring WARNING ⚠️ File readme.txt referenced by /Users/loubrieu/Downloads/aaDOI_production_submitted_labels[4]/GEO_reserve_shocked_feldspar_20200330/aaaSubmitted_by_GEO_20200316/bundle_lab_shocked_feldspars.xml does not exist; ignoring Traceback (most recent call last): File "/Users/loubrieu/tmp/venv-d/bin/pds-deep-archive", line 11, in load_entry_point('pds.deeparchive==0.2.2', 'console_scripts', 'pds-deep-archive')() File "/Users/loubrieu/tmp/venv-d/lib/python3.7/site-packages/pds/aipgen/main.py", line 102, in main comprehendDirectory(os.path.dirname(os.path.abspath(args.bundle.name)), con) File "/Users/loubrieu/tmp/venv-d/lib/python3.7/site-packages/pds/aipgen/utils.py", line 126, in comprehendDirectory lid, vid = getLogicalVersionIdentifier(tree) File "/Users/loubrieu/tmp/venv-d/lib/python3.7/site-packages/pds/aipgen/utils.py", line 94, in getLogicalVersionIdentifier lid = matches[0].text.strip() AttributeError: 'NoneType' object has no attribute 'strip' (venv-d) (base) loubrieu@MT-212318 tmp % python Python 3.7.4 (default, Aug 13 2019, 15:17:50) [Clang 4.0.1 (tags/RELEASE_401/final)] :: Anaconda, Inc. on darwin Type "help", "copyright", "credits" or "license" for more information.

import pds.deeparchive Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'pds.deeparchive' import pds-deep-archive File "", line 1 import pds-deep-archive ^ SyntaxError: invalid syntax import pds_deep_archive Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'pds_deep_archive'

(venv-d) (base) loubrieu@MT-212318 tmp % pip freeze lxml==4.6.1 pds.deeparchive==0.2.2

Version of Software Used 0.2.2

Desktop (please complete the following information): Gary: ?

nutjob4life commented 3 years ago

@tloubrieu-jpl I don't think this is a bug so much as the presence of a zero-length .xml file under Gary's testDeep/uranus_occ_support/ directory but I can treat it as a bug if you like.

However I will need access to the entire testDeep/uranus_occ_support and not just the bundle.xml.zip attached to this issue.

tloubrieu-jpl commented 3 years ago

Thanks @nutjob4life I will report to Gary.