Open OmkarSaMo opened 1 year ago
This is definitely doable!
We can add getphylo and I have already written scripts for comparing trees and alignments. With a little tweaking I could formalise these scripts to produce a nice report (the current output is just text lines).
We could also add IQ-TREE for hardcore phylogenetics runs. I'm not experienced writing workflows but I'd be happy to work together to get these added!
This is now implemented in the PR for v0.7.9 as a BGC subworkflow
I think it would be valuable to create a phylogenetic tree sub workflow.
Perhaps we can add a
compare_phylo
rule to compare if different trees are in agreement with each other.We can consider other options too.
@drboothtj let us know your thoughts on this sub-workflow that can do different relevant phylogenetic analysis.