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NBISweden / AGAT

Another Gtf/Gff Analysis Toolkit
GNU General Public License v3.0
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Perl error after agat installation #322

Closed Nivskrishnan05 closed 1 year ago

Nivskrishnan05 commented 1 year ago

I have installed agat using conda and it was successful. However, initiation of agat prints an error message. Kindly help me resolve the issue.

(agat) [nivi@meg-5b ~]$ agat perl: symbol lookup error: /var/bin/perl5/lib/perl5/x86_64-linux-thread-multi/auto/Sub/Name/Name.so: undefined symbol: Perl_xs_apiversion_bootcheck (agat) [nivi@meg-5b ~]$ which perl /home2/niviyah_krishnan/.local/miniconda3/envs/agat/bin/perl

General :

Juke34 commented 1 year ago

Sounds like your perl installation (/var/bin/perl5/lib/perl5/x86_64-linux-thread-multi/auto/Sub/Name/Name.so) interfers with the perl installed via Conda. If a PERL5LIB environment variable is set you should remove it. Temporarly via "unset PERL5LIB", or definitely by removing the PERL5LIB environment variable from configuration file: e.g. bashrc, bash_profile, profile, /etc/envrironments, etc.